Lotus Trancription Factor Knowledge Base
----Lotus - TFKB (1.0)

  • The Lotus Transcription Factor Knowledge Base (TFKB) is collecting over 2000 predicted transcription factors.
  • We used the assembled transcripts from EST-based unigenes and genomic sequences to predict TFs.
  • The following table allows to browse TF families. The numbers in parenthesis show the number of loci and number of gene models found, respectively. When the information about loci is not available, N/A (Not apply) appears.
1
ABI3VP1 (N/A) Alfin-like (N/A) AP2-EREBP (N/A)
ARF (N/A) ARID (4) ARR-B
BBR-BPC (N/A)bHLH (N/A) bZIP (N/A)
CAMTA C2C2-CO-like (N/A) GIF (N/A)
CONSTANS (N/A) C2C2-GATA (N/A) C2H2 (N/A)
C3H (N/A) MBF (N/A) CCAAT-DR1 (N/A)
CCAAT-HAP2 (N/A) CCAAT HAP3 (N/A) CCAAT-HAP5 (N/A)
CPP (16) E2F (N/A) EIL (N/A)
G2-like (N/A) GeBP (N/A) GRAS (N/A)
GRF (N/A) Homeobox (N/A) HRT (N/A)
HSF (N/A) JUMONJI (N/A) MADS
MYB(N/A) MYB related (N/A) NAC (200+)
Orphan (N/A) PHD (N/A) SRS (N/A)
SBP (N/A) TCP (N/A) Trihelix (N/A)
TUB (n/a) VOZ (8) WHIRLY
WRKY (N/A) ZF-HD (N/A) ZIM (N/A)
LYF (2) NZZ (5) ULT (30+)
TAZ (18) LUG (10) AS2
AUX-IAA HSF (n/a) HMG (n/a)
BES (N/A) Dof (N/A) ERF
FHA (N/A) LIM TULP
SET (N/A) SNF2 (N/A) DDT (N/A)
RB (N/A) S1FA (N/A) RWP-RK (N/A)
PLATZ (N/A) PBF-2-like (N/A) CSD (N/A)
Sigma70-like (N/A) SAP (N/A) Nin-like (N/A)
PcG (N/A) C2C2-YABBY (N/A) (N/A)


Last updated on May 25, 2009 by Dr. Jeff Chen.